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Visualization was achieved using: Stacked bar plots for immune cell proportions, Heatmaps (R pheatmap package) for 22 immune cell types, Violin plots (R vioplot package) for abundance comparisons.
For majority of the data analysis, Python (v3.9) packages and scripts were used, with visualization done by the Matplotlib package (v3.7.1; Hunter, 2007). Stacked bar plots were created with ...